If you have already tried "Apply to Folders" and the view settings are not sticking, you may have hit the 5000 saved views limit. However, if you used "Apply to Folders" and only see an issue with folders when they're accessed via an app's file open/save dialog, that's normal. The open/save dialog views are not updated by "Apply to Folders".
You can fix either issue by first deleting the HKCU Bags/BagMRU key pair from the registry and then use "Apply to Folders". That should give you consistent views everywhere, but is a solution that is probably too technical for most users. Alternatively, you can use my free WinSetView tool to do that work for you.