I would first verify the assumption that WAP is the problem. If AD FS is issuing tokens successfully, federation metadata is likely not the root cause. WAP itself typically does not perform Kerberos constrained delegation in a standard AD FS publishing scenario.
The fastest troubleshooting path is to check the exact Kerberos error code and validate SPNs using:
setspn -X
setspn -L <service account>
Missing or duplicate SPNs are the most common cause of backend Kerberos failures.
Also review DC Security logs (Event IDs 4769 and 4771), AD FS Admin logs, and a network trace to identify whether the failure occurs during ticket issuance, service ticket lookup, or backend authentication. I would avoid modifying relying party trusts until SPN and delegation settings have been fully validated.