(1) Can you boot to the eCS CD & enter maintenance mode to see whether the boot files are intact? Can you examine the IBM Boot Manager? I doubt it is in the MBR. Probably it is an executable invoked from within your BCD. I'm thinking the MBR points the way to that. I still want to see the BCD. Here is an article that shows how to repair an eCS boot, but this was an installation that uses the Windows Boot Manager (not the IBM Boot Manager)...
https://www.os2world.com/wiki/index.php/Installing_eComStation_2.1_and_Windows_8_with_Dual_Boot Installing eComStation 2.1 and Windows 8 with Dual Boot
(2) Let's see...
DiskPart <<<Enter DiskPart
List Vol <<<List volumes & letters
List Disk <<<List the disks
Select Disk 0 <<<Focus on Disk 0
List Part <<<List its partitions
Select Part 1 <<<Focus on partition 1
Detail Part <<<Show its details
=== Select each other partition & show its details ===
Exit <<<Leave DiskPart
I want to see that the System Reserved partition is marked active & that it is the only active partition. Also, we can put a letter on it & try to access the BCD directly.