I'm facing the same issue.
I have the supposed fix installed:
Disappearance of Windows 11 Taskbar Icons after Switching Virtual Desktops
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Anonymous
Windows 11 22H2
In Windows 11's built-in virtual desktop feature, there is a high probability that icons of active applications on the current desktop may not be displayed when switching between different virtual desktops. The icons only appear when I click on the respective application. I have attempted to resolve the issue through restarts and using Sfc and Dism for repairs, but the problem persists. An essential configuration to note is that the taskbar is set to display windows only from the current desktop.
Windows for home | Windows 11 | Performance and system failures
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172 answers
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Anonymous
2023-12-10T14:06:25+00:00 -
Anonymous
2023-12-09T11:29:56+00:00 Didn't work for me. However, I do like the instant switching so I'm keeping it.
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Anonymous
2023-12-09T10:26:07+00:00 So because of the constant lag of switching between desktops I disabled Animation Effects and it seems to have resolved the icon issue for me. On a side note, disabling the animations is so much nicer as switching desktops is instant now.
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Anonymous
2023-12-08T19:33:17+00:00 Same issue here
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Anonymous
2023-12-07T07:06:32+00:00 Great finding! :-) Much easier than to minimize+maximize the windows and works for me regardless on which monitor an app window is shown currently.