Did you upgrade desktop motherboard with Xeon? Unfortunately this may cause some problems of itself.
Now most of the time this website won't let me post replies. I press SUBMIT but it gives a red circle with a line, and won't post it. Why?
No, it came with the Xeon's, and didn't have this problem until right after I tried to upgrade from Windows 7 to 10, couldn't get it done, and had a repair place do it.
Someone suggested Chkdsk, but I couldn't find how to run that as admin (Windows has hidden it somewhere). However, I ran HDTune overnight, which does a more thorough analysis, and it didn't find a problem.
Now here is something strange - I rebooted and started HDTune when it wasn't having the problem. Of course, HDTune makes heavy use of the HD. After about a half hour, I could see on Task Manager that the things that take up a lot of CPU had started, as they always do, but now the system was reasonably responsive! As responsive as you would expect with HDTune running.
I rebooted again within the last hour, and it was OK, until the problem started again after about 32 minutes.