My thoughts on this is that the original and/or the second (apparently updated from the 1st one issued for May for some reason, it is unusual to have two in the same month especially so close together) from auto update would have automatically run a quick
scan, presumably no notification was given of a problem found or error reported and that this therefore is not something to fret about at this time at least. Since the next months newer version of the MRT always carries the same KB number and a new one is
due any day now just check the Settings update history and when you see that it has been downloaded, say the day before so as not to attempt to manually run it while it may be silently running in the background as per default, and then see if the issue with
the manual initiation of the scan persists.
If one is worried that there may be a hidden infection on their device the Microsoft Safety Scanner is linked to on the MRT page that I linked in my first reply to this thread.
Remember and or be aware that the MRT is not a substitution for anti-virus real-time protection, it is a once a month (generally) downloaded and silently run in the background second layer specifically designed to remove any malicious files and/or software,
with the most recent definitions available at the time of it's release, that may have been so new that they may have slipped through the real time AV solution that is being used on the device.
IMHO, Windows 10 Defender is a top notch world class AV application as well as being the least intrusive and resource hungry when integrated with the Win 10 OS. This is what I use and I then also have MBAM free installed and use it as a stand alone secondary
scan about once a month in case something may have slipped through the Win 10 Defender and nothing has yet (I am careful not to invite or allow the installation of PUP's on my device).
Any further thoughts on this topic are invited.
-Richard