One other thing I noticed on another board, and I checked on my computer, is that if you use the "Start" menu to shut down the startup is significantly longer than when you use the "charm". In my case, startup goes from about 13 seconds to about a minute and a half. Am using W8.1.
I think the reason using the shut down feature in the "Start" menu makes the computer boot longer is because it is the "normal" shut down feature. And in the charm, the shut down feature is the hybrid shut down feature, which makes the booting time shorter and faster.
You can test this using the command line:
Normal Shut Down: Shutdown -s -f -t 00
Hybrid Shut Down: Shutdown -s -f -t 00 -hybrid
So if anyone knows how to change the "normal" shut down in the "start" menu to hybrid shutdown using some kinds of command codes, that would fix the slow shut down when using start menu to shut down.
I've also found out that we can create a hybrid shut down shortcut to help shut down computer fast and conveniently from here: http://www.eightforums.com/tutorials/7205-hybrid-shut-down-shortcut-create-windows-8-a.html
This is the reason why PC with W8.1 have very slow boot up time.
With shutdown option in start button, boot time is ~ 1 Min
With shutdown option in charmbar, boot time is 10 secs
Note: My laptop's HDD is only 5400rpm