They were invalid entries and shortcuts, that can be more than orphaned entries. And if orphaned entries have no effect, then why is it so difficult for Microsoft to make a utility to remove that junk?
I really don't understand why so many people are trying to find excuses for Microsoft's apparent inability to get their act together and make a utility for registry maintenance.
I you work in the ICT, then the first thing you should know is that you keep everything tidy, clean and well organized. I have learned that in the past 40 years, it really shouldn't be open for discussion.