I have similar issues.
My company has many two monitor systems that use a 4 port DVI switch (IO Gear GCS1764) to switch one of the monitors between 1 to 3 laptops and a desktop.
The desktop uses both monitors, one of which is set as monitor 2 and monitor one is set to go through the KVM switch.
Old behavior under Vista 64 Ultimate:
Right Monitor always desktop screen 2 in portrait mode and monitor one switches based on KVM to show landscape as switched.
The right screen shows an application that the users need to always need to be able to see, and the left screen shows the KVM switch controlled single screen.
New Behavior under Windows 7 Ultimate: When switched, right monitor goes to landscape and shows desktop as screen one.
Left monitor works as expected. When I switch back to Desktop, all goes back ok but windows are all resized and moved to screen one as if it was a 800x600 monitor and not a 1920x1200.
Problem- I can't read my right screen when I am not on the desktop (it is sideways) and each time I switch systems I have to resize
and reposition my windows. So, Windows 7 is useless to me and I need to go back to Vista (now that is a pain and also who could imagine that Vista is better than Windows 7.)
So, the auto detect for us is the problem- when I switch monitors, Windows 7 sees that the first screen is gone and resets.
I just need to be able to tell Windows 7 not to care about monitor detect.
Any updates on when this will be fixed or do we need to stop the rollout to Windows 7?
My users are all upset with us in IT and think we are idiots because we are telling them we cannot upgrade, and they still think we are idiots because we first went with Vista when service pack 1 was released.
I feel betrayed by Microsoft on such a simple issue- how can this be such a hard thing to fix?