So I bought a NOS power cover on ebay and had the same issue as everyone here, having knowledge of li-ion batteries I suspected that the batteries self discharged below the cut off voltage (generally the cut off voltage is 2.2-2.9V/cell) in the charging circuitry that then permits the cells to charge. So with my knowledge of electronics and sense of adventure I managed to gain access to the cells and found that they were discharged down to 1.85V, I applied a small amount of current to each cell raising the cell voltage to about 2.8V, put it all back together and it is now working perfectly. Doing this voids all warranties and as some people will tell you that this is risky if you don't know what you are doing.
So in summary, the problems everyone here are having is due to the cells self discharging and the Battery Management System (BMS) is not allowing the battery to take a charge.
More information regarding "sleeping Li-Ion cells" can be found here:
http://batteryuniversity.com/learn/article/low\_voltage\_cut\_off