My nVidia GPU wasn't disappearing after updates but it would disappear seemingly randomly.
Also, the base would get overly warm when charging with the Microsoft charger.
I discovered that the likelihood of the GPU going missing increased when I exercised the hinge.
I disconnected the tablet portion, cleaned the three data/power connectors and the two lugs on the base (I used one of those magic sponges to delicately wipe the conductive bits and then a mildly damp cloth to wipe off any residue) and then reconnected the two halves.
This seems to have improved the reliability of the connection when folding the laptop and the base doesn't become quite so warm when charging.
However, I am concerned that the base does become warmer than I expect when in use and charging (given that many of my uses shouldn't be using the nVidia GPU).